Basic Information
VIS ID
TVIS30001457
Fusion event
HIV-PIK3CD-AS2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.22
Reference genome
GRCh37/hg19
Start
9744949/9684891 (Hg38)
End
9744949/9684891 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA1A
Target gene
PIK3CD-AS2
Nearest miRNA
hsa-mir-12136/Upstream/533114; hsa-mir-101-1/Downstream/282490;
Nearest TSS
ENST00000473358/Upstream/30305; ENST00000484851/Downstream/2664;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/31948, chr1-CpG: 102/Downstream/4346
Upstream sequence
cctgtgatagcgccactgcactccagcctgggtcacagtgtgagaccctgtctcaaaaaaaaaaaaaaaagaaagaaaaaagaaaaaaGAATGAGCAATG
Downstream sequence
CAAACCCAAGCTTTTTTTTTTTCTCTCTCTGCTTATATCCCCAACCCCTCAACTCCTGCCCCAGGTCACAAACTCAGGAAGCCTCAATTAAGACAGACTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate