VISDB Viral Integration Site DataBase

VIS ID

TVIS30001466

Fusion event

HIV-EFHD2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.21

Reference genome

Start

End

15742109/15415613 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-340-5p ; hsa-mir-124-3p ; hsa-mir-34a-5p ; hsa-mir-7-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-513a-5p ; hsa-mir-329-5p ; hsa-mir-3145-3p ; hsa-mir-4460 ; hsa-mir-4464 ; hsa-mir-4748 ; hsa-mir-6509-5p ; hsa-mir-101-5p ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-4444 ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-183-5p ; hsa-mir-1294 ; hsa-mir-4316 ; hsa-mir-376a-2-5p ; hsa-mir-2861 ; hsa-mir-6735-3p ; hsa-mir-6811-3p ; hsa-mir-202-3p ; hsa-mir-4677-3p ; hsa-mir-4304 ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-6732-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7d-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-mir-98-5p ; hsa-let-7a-5p ; hsa-let-7i-5p ; hsa-mir-3678-3p ; hsa-mir-517c-3p ; hsa-mir-517b-3p ; hsa-mir-517a-3p ; hsa-mir-3190-3p ; hsa-mir-128-2-5p ; hsa-mir-128-1-5p ; hsa-mir-6090 ; hsa-mir-6825-5p ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-4749-5p ; hsa-mir-4706 ; hsa-mir-2467-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-4536-3p ; hsa-mir-759 ; hsa-mir-4781-5p ; hsa-mir-6772-3p ; hsa-mir-411-5p ; hsa-mir-4281 ; hsa-mir-136-5p ; hsa-mir-1247-5p ; hsa-mir-140-5p ; hsa-mir-6718-5p ; hsa-mir-203b-5p ; hsa-mir-1244 ; hsa-mir-133a-3p ; hsa-mir-222-5p ; hsa-mir-766-5p ; hsa-mir-6077 ; hsa-mir-6124 ; hsa-mir-3129-5p ; hsa-mir-199b-3p ; hsa-mir-199a-3p ; hsa-mir-936 ; hsa-mir-6847-5p ; hsa-mir-6768-3p

Nearest miRNA

hsa-mir-12136/Upstream/2836590; hsa-mir-101-1/Downstream/1443336;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/4881, chr1-CpG: 105/Downstream/108490

Upstream sequence

agtctcgctctgccaccaaggctgaagtacagtggcatgatcttggctcactgcagccttcgtctcctgggttcaagtgattctcctgcttcagcctccc

Downstream sequence

aagtagctgggactacaagcacacaccaccatgcctggctaatttttgtatttttgagtagagacgggatttcaccatgttggccaggctggtctcgaac