Basic Information
VIS ID
TVIS30001468
Fusion event
HIV-MIR5096 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.13
Reference genome
GRCh37/hg19
Start
16227454/15900959 (Hg38)
End
16227454/15900959 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA1A
Target gene
MIR5096
Nearest miRNA
hsa-mir-12136/Upstream/3321936; hsa-mir-101-1/Downstream/957990;
Nearest TSS
ENST00000473358/Upstream/24383; ENST00000487496/Downstream/37624;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/51337, chr1-CpG: 22/Downstream/33416
Upstream sequence
tgccagtaaccctaccccaccccacccccactgtgacaacaaaaatgtTGtagaaccctgctaaaactagtagggtccttgaaagatcatgaggtctgct
Downstream sequence
aaccgctagggaaattcaagttaagagaggcaaaatgaagtgtcttggcaggtcactcagttgattaTTTCCTTGTTATTTTTTGGAGTAAAAAAAAAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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