VISDB Viral Integration Site DataBase

VIS ID

TVIS30001473

Fusion event

HIV-MICOS10 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.13

Reference genome

Start

End

19948345/19621851 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-6741-5p ; hsa-mir-7977 ; hsa-mir-4266 ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-5589-5p ; hsa-mir-4746-3p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6776-5p ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-383-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6894-5p ; hsa-mir-6087 ; hsa-mir-6089 ; hsa-mir-7162-3p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-665 ; hsa-mir-1273e ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-7706 ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-518e-3p ; hsa-mir-6771-5p ; hsa-mir-6746-5p ; hsa-mir-5690 ; hsa-mir-6883-3p ; hsa-mir-210-5p ; hsa-mir-4749-3p ; hsa-mir-6892-3p ; hsa-mir-454-5p ; hsa-mir-6777-3p ; hsa-mir-365b-3p ; hsa-mir-365a-3p

Nearest miRNA

hsa-mir-12136/Upstream/724703; hsa-mir-101-1/Downstream/1011828;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/24343, chr1-CpG: 196/Downstream/21910

Upstream sequence

GTATCCCTCTTTGAGGTGGGTAGGAGAGCCCAGGATGCTGGAGGCTCCTTGCCAGCAGTGTAGAGAGGGTCCACTCTAGAACAGTCTCCTGGCTTGTTCC

Downstream sequence

CCTGCCCCACACCCCGCAACTTGTCTAGAGAGAACAGGGAGTCAAGTTTTTATTTCATGTTGGGCAGGAGAACCAAAGGCATCTGTAAAACCTCTGACAA