Basic Information
VIS ID
TVIS30001474
Fusion event
HIV-LOC112268222 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
21066720/20740227 (Hg38)
End
21066720/20740227 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
LOC112268222
Nearest miRNA
hsa-mir-12136/Upstream/106439; hsa-mir-101-1/Downstream/248087;
Nearest TSS
ENST00000473358/Upstream/7347; ENST00000416959/Downstream/9520;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/7354, chr1-CpG: 175/Downstream/45988
Nearby gene
HP1BP3(No orient, 2451)
Upstream sequence
taaaataaaaaTAGTATCTGTACAGAGCCCGATGTGGAAGAAGCTCAGCTAGTGTTAATCGTTATGACTATTACTACTTACATTAATAAGCCAAACTTAC
Downstream sequence
AACTATACTTTATGAGACATACTCTAGGCACCACAGAGTTCTCTTTTGCTAAGCAAAGATTTAATAGTGAACAGTGTTAATTATACATTATATACAATAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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