VISDB Viral Integration Site DataBase

VIS ID

TVIS30001476

Fusion event

HIV-USP48 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.12

Reference genome

Start

End

22048388/21721895 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-148b-3p ; hsa-mir-580-3p ; hsa-mir-7153-5p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-589-5p ; hsa-mir-4539 ; hsa-mir-545-5p ; hsa-mir-8063 ; hsa-mir-374b-3p ; hsa-let-7i-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-1468-3p ; hsa-mir-5590-3p ; hsa-mir-545-3p ; hsa-mir-142-5p ; hsa-mir-646 ; hsa-mir-548p ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-1305 ; hsa-mir-943 ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-1290 ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-1246 ; hsa-mir-892a ; hsa-mir-4796-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-17-5p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-106a-5p ; hsa-mir-106b-5p

Nearest miRNA

hsa-mir-12136/Upstream/733463; hsa-mir-101-1/Downstream/544344;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/51979, chr1-CpG: 111/Downstream/60741

Upstream sequence

TTTCATTCAAACAGACTTCCTGTTAGGAAAATGTTTTCAGCACTTCACAAACACAGACACATTCTAAACCAAAGTCACAAATGTTGGCAATATGGCAAAT

Downstream sequence

TGGTATATACCCTAAATTATTTTACTAAGACAATTAGAAACCAAGACGGCAATACTGTTATCTGAATAAAGAACAATGAGAGACAAAATGTTGTATTACA