Basic Information
VIS ID
TVIS30001484
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.11
Reference genome
GRCh37/hg19
Start
25342213/25015722 (Hg38)
End
25342213/25015722 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/96306; hsa-mir-101-1/Downstream/7781;
Nearest TSS
ENST00000473358/Upstream/44857; ENST00000455902/Downstream/97397;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/83208, chr1-CpG: 45/Downstream/216350
Nearby gene
MIR4425(No orient, 7781)
Upstream sequence
GAAGAGAACAGTGTTCCTGGTGGAATGAGGACAGGCTGCACTTCTGCAAAGACTCTGGGGTGAGGGGGCTGGCGCGGAGGCTGAGACATGCTAGGGCCCC
Downstream sequence
CTAGCCTGGGCTGTGTGAATGAGGCCAGTGGCACAGCACGGGTGCACTTGGCTTGGTGCTCAGTGGCCAGGCTCAGACCTCACCACTTCCATTTGCGTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate