Basic Information
VIS ID
TVIS30001488
Fusion event
HIV-MACO1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.11
Reference genome
GRCh37/hg19
Start
25816459/25489968 (Hg38)
End
25816459/25489968 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
MACO1
miRNAs that regulate target gene
hsa-mir-4446-5p ; hsa-mir-3679-3p ; hsa-mir-6832-3p ; hsa-mir-627-3p
Nearest miRNA
hsa-mir-12136/Upstream/466382; hsa-mir-101-1/Downstream/416394;
Nearest TSS
ENST00000473358/Upstream/41075; ENST00000485476/Downstream/53612;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/58344, chr1-CpG: 109/Downstream/53434
Upstream sequence
gatggcctggagtacagtaccgaaaaaaatacgaaaaaaagtaaaggtggcatcagagatagatgggaaaggtaacgattagtcagtaaaaggctttgga
Downstream sequence
atagctaaataactggagaaaaaaaattagaaactcatctcatgccacatataaagaaattccagatgaagagttgaaggcagaaaaaacaaagaataaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate