Basic Information
VIS ID
TVIS30001507
Fusion event
HIV-FAM76A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.3
Reference genome
GRCh37/hg19
Start
28086110/27759599 (Hg38)
End
28086110/27759599 (Hg38)
Orient
-
Location type
Exonic
Fragile sites / regions
FRA1A
Target gene
FAM76A
miRNAs that regulate target gene
hsa-mir-374b-5p ; hsa-mir-124-3p ; hsa-mir-410-3p ; hsa-mir-3689a-5p ; hsa-mir-3689b-5p ; hsa-mir-3689e ; hsa-mir-3689f ; hsa-mir-5011-5p ; hsa-mir-548g-3p ; hsa-mir-155-5p ; hsa-mir-365b-3p ; hsa-mir-365a-3p
Nearest miRNA
hsa-mir-12136/Upstream/1205006; hsa-mir-101-1/Downstream/2979557;
Nearest TSS
ENST00000473358/Upstream/14825; ENST00000468761/Downstream/13584;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/33108, chr1-CpG: 39/Downstream/13518
Upstream sequence
TGGTTATTCTGCCTTGTTTCCCTCAGATTACAGAGTTGAAGGCTGATTTTCAGTACCAGGAATCGCAGATGAGAGCCAAAATGAACCAGATGGAGAAAAC
Downstream sequence
CCACAAAGAAGTCACAGAACAACTGCAGGTGACTGACTCTGCTTATTTTATGTGCTAAAATTGTGTACCTACCTGGTATACCTAGCTGATTGTATTTTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate