Basic Information
VIS ID
TVIS30001512
Fusion event
HIV-YTHDF2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.3
Reference genome
GRCh37/hg19
Start
29077014/28750502 (Hg38)
End
29077014/28750502 (Hg38)
Orient
-
Location type
Intronic
Target gene
YTHDF2
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-615-3p ; hsa-mir-106b-5p
Nearest miRNA
hsa-mir-12136/Upstream/2195909; hsa-mir-101-1/Downstream/1988654;
Nearest TSS
ENST00000473358/Upstream/11411; ENST00000621425/Downstream/61640;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/12699, chr1-CpG: 26/Downstream/24776
Upstream sequence
tagtcacagaatttcaagaaactaaaagagatgttatagaaactaaactagggatgttgtagagggggttcatacatagggtagtctggactagaGAAAC
Downstream sequence
CAAGGGATAAAAGAGGATTAGCTGACTCAGGATAACATTTCAGGTTTGTGAAGATGAATTTGTCCTTTGAAACAGATCTTTTTAGAAAGGTTGTTTCATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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