Basic Information
VIS ID
TVIS30001513
Fusion event
HIV-YTHDF2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.3
Reference genome
GRCh37/hg19
Start
29081785/28755273 (Hg38)
End
29081785/28755273 (Hg38)
Orient
+
Location type
Intronic
Target gene
YTHDF2
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-615-3p ; hsa-mir-106b-5p
Nearest miRNA
hsa-mir-12136/Upstream/2200680; hsa-mir-101-1/Downstream/1983883;
Nearest TSS
ENST00000473358/Upstream/16182; ENST00000621425/Downstream/56869;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/17470, chr1-CpG: 26/Downstream/20005
Upstream sequence
tggggttgtattggcttttggaaatagtttcaggtgcctgtgatagtagcagcagccaggtgatagtaggcagctgggaatctggagctcagATTGTTGA
Downstream sequence
CAGGAATTTGAATTTTCAACCCTCAGGATAGGTAAAGGCATGGAAGAGTTTGACTTTTCAAAGATTCTTGTAATaagaatggctaacagttattgaatgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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