Basic Information
VIS ID
TVIS30001523
Fusion event
HIV-PTP4A2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.2
Reference genome
End
32377477/31911876 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/153141; hsa-mir-101-1/Downstream/175073;
Nearest cancer related gene
PTP4A2(OG, No orient, 0)
Upstream sequence
TCATCTACTATCTGATTAGGGGGTGGAGCTCCATCATCAAATGGCCAATCCTGAAAAGAAATGACCTTTTACATTAAATTGATATTTTCTCCATGATTAA
Downstream sequence
CATCCTAATACAGAATACCTGCACACAGTACACACGGCAGGCCTAACTGAACTAACTGCACTATATATACCTATTGTTAACACAATTCTGATCATTGCTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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