Basic Information
VIS ID
TVIS30001529
Fusion event
HIV-ZBTB8OS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.1
Reference genome
GRCh37/hg19
Start
33091304/32625703 (Hg38)
End
33091304/32625703 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZBTB8OS
miRNAs that regulate target gene
hsa-mir-25-3p ; hsa-mir-665 ; hsa-mir-7160-5p ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-485-5p ; hsa-mir-6884-5p ; hsa-mir-7162-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6888-5p ; hsa-mir-4684-5p ; hsa-mir-4744 ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-6771-3p ; hsa-mir-6771-5p ; hsa-mir-6746-5p
Nearest miRNA
hsa-mir-12136/Upstream/538696; hsa-mir-101-1/Downstream/706690;
Nearest TSS
ENST00000473358/Upstream/86274; ENST00000465780/Downstream/6355;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/85565, chr1-CpG: 96/Downstream/25239
Upstream sequence
gtgtgcacctgtaagctcagctactcaggagactgaagtggggggattgcttgagactaggagtttcggatcagcctgggcaacacagcaaggcactgtc
Downstream sequence
tcacataaacaaaaaCTCTTAGGAATAAATGAAATTAATTTGCTCACAATCCATTCTGAACACTTCCAATGACAAATATGAATTTAGAATAcagttatgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate