Basic Information
VIS ID
TVIS30001532
Fusion event
HIV-S100PBP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.1
Reference genome
GRCh37/hg19
Start
33311283/32845682 (Hg38)
End
33311283/32845682 (Hg38)
Orient
-
Location type
Intronic
Target gene
S100PBP
miRNAs that regulate target gene
hsa-let-7a-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-944
Nearest miRNA
hsa-mir-12136/Upstream/758675; hsa-mir-101-1/Downstream/486711;
Nearest TSS
ENST00000473358/Upstream/20785; ENST00000525203/Downstream/1120;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/27377, chr1-CpG: 74/Downstream/24983
Upstream sequence
gatcttgagaactttctattttctctaagcattttaagccataggctcccctttaggcactgctagctgcatcccacacattttgatatgttttcatttt
Downstream sequence
ctttttttttttttttaagataaagccttgctctgtcacccagcctgagtgcagtggtacaatcatggttcactgtagcatcaacctcccgggctcgtga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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