Basic Information
VIS ID
TVIS30001535
Fusion event
HIV-ZMYM4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
35779621/35314020 (Hg38)
End
35779621/35314020 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZMYM4
miRNAs that regulate target gene
hsa-mir-3149 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6789-3p ; hsa-mir-4707-3p ; hsa-mir-4258 ; hsa-mir-4438 ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-449a ; hsa-mir-449b-5p ; hsa-mir-4698 ; hsa-mir-4705 ; hsa-mir-548au-3p ; hsa-mir-551b-5p ; hsa-mir-7150 ; hsa-mir-8063
Nearest miRNA
hsa-mir-12136/Upstream/644326; hsa-mir-101-1/Downstream/1847543;
Nearest TSS
ENST00000473358/Upstream/44987; ENST00000482131/Downstream/47685;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/44766, chr1-CpG: 95/Downstream/243059
Upstream sequence
atagagcctagcaaccatttgctgactagaggtcattcacatactcttagttcctgaaaactcacacctctgcttaactttaggTATCACTAATTGAAGA
Downstream sequence
GAAGCAGTCCAAGGTTTTTATTTTTACCTTAAATAATTGAGAAAACTTTTATTTGTTGTTTTAGTTATAAGTTTTATAATTTACATCATGTTTGCTATAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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