Basic Information
VIS ID
TVIS30001538
Fusion event
HIV-KIAA0319L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
36001973/35536372 (Hg38)
End
36001973/35536372 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIAA0319L
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-128-3p ; hsa-mir-423-3p ; hsa-mir-432-5p ; hsa-mir-218-5p ; hsa-mir-5689 ; hsa-mir-571 ; hsa-mir-219a-1-3p ; hsa-mir-129-5p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-431-5p ; hsa-mir-4294 ; hsa-mir-3194-3p ; hsa-mir-924
Nearest miRNA
hsa-mir-12136/Upstream/866678; hsa-mir-101-1/Downstream/1625191;
Nearest TSS
ENST00000473358/Upstream/29505; ENST00000459931/Downstream/18615;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/267118, chr1-CpG: 95/Downstream/20707
Upstream sequence
TTTCCTGTCTAAACTCTAAACTAGAAAATCCTTTCAAATCCCAAAGAAATCTTTCCTCATGAAAGGACCAACCAAATTTCAGCTCCCTGAGCTACCTATT
Downstream sequence
TCAGACCATTCGACTTCACTCAAAGGTGACATAAGCCTTCACCATGAAAATTTCTGAACAAAGCAACAGTGGAGAATAGCTTCCCAGTTCACCTAGGCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate