VISDB Viral Integration Site DataBase

VIS ID

TVIS30001541

Fusion event

HIV-THRAP3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

36710557/36244956 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-877-3p ; hsa-mir-877-5p ; hsa-mir-615-3p ; hsa-mir-326 ; hsa-mir-125a-5p ; hsa-mir-125b-5p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-3153 ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-3973 ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-6783-5p ; hsa-mir-548bb-5p ; hsa-mir-203a-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-548p ; hsa-mir-5680 ; hsa-mir-625-3p ; hsa-mir-3936

Nearest miRNA

hsa-mir-12136/Upstream/1575262; hsa-mir-101-1/Downstream/916607;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/20470, chr1-CpG: 110/Downstream/61273

Upstream sequence

acaggcacacgccaccacgcccagctaattttgttttgtatttttagtagagacggggtttcatgatgttggccaggatggtctcaaactcctgacctcg

Downstream sequence

tgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggccAGAGCCAGGTTAACTACTAAGTCTTCCTCCTGAAAAC