Basic Information
VIS ID
TVIS30001556
Fusion event
HIV-LOC105378687 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37/hg19
Start
43821963/43356292 (Hg38)
End
43821963/43356292 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378687
Nearest miRNA
hsa-mir-12136/Upstream/184580; hsa-mir-101-1/Downstream/8356;
Nearest TSS
ENST00000473358/Upstream/7029; ENST00000478882/Downstream/2366;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/6686, chr1-CpG: 74/Downstream/2171
Nearby gene
MPL(No orient, 1828)
Upstream sequence
aagccaagtgaagatgaaggcagagaacagggcgattcttctataagccaaggaatgacaaagattgccggcaaaccaccaccagaagccaggagagagg
Downstream sequence
catggaacagattcttcctcacggttctcacacaactctcatgacaccttgatctggaacttctaacctccagaattgtgagacaaccaatttctgtcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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