Basic Information
VIS ID
TVIS30001557
Fusion event
HIV-ERI3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.1
Reference genome
GRCh37/hg19
Start
44737072/44271400 (Hg38)
End
44737072/44271400 (Hg38)
Orient
+
Location type
Intronic
Target gene
ERI3
miRNAs that regulate target gene
hsa-mir-455-3p
Nearest miRNA
hsa-mir-12136/Upstream/432717; hsa-mir-101-1/Downstream/274093;
Nearest TSS
ENST00000473358/Upstream/14479; ENST00000487332/Downstream/48350;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/57607, chr1-CpG: 45/Downstream/83585
Upstream sequence
caacgtgcttcaccacttcaggcctttctttacacttctccctttgcctggatgcacttgcaccgtcacctgagaatatactcatctttcaacactcaag
Downstream sequence
tatctccaccaaaacctttcttgattttcTCTCCCACACCCCAAATAAAAATGACTCCTCCCTCCTTTGCACTGGCAGcaacaaagtaaagcagttaaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate