Basic Information
VIS ID
TVIS30001560
Fusion event
HIV-ZSWIM5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.1
Reference genome
GRCh37/hg19
Start
45666172/45200500 (Hg38)
End
45666172/45200500 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZSWIM5
miRNAs that regulate target gene
hsa-mir-205-5p ; hsa-mir-4287 ; hsa-mir-4325 ; hsa-mir-4469 ; hsa-mir-452-3p ; hsa-mir-4685-3p ; hsa-mir-4713-5p ; hsa-mir-4793-3p ; hsa-mir-629-3p ; hsa-mir-6500-3p ; hsa-mir-6752-3p ; hsa-mir-6867-3p ; hsa-mir-7113-3p ; hsa-mir-942-5p
Nearest miRNA
hsa-mir-12136/Upstream/654948; hsa-mir-101-1/Downstream/5859337;
Nearest TSS
ENST00000473358/Upstream/185953; ENST00000626198/Downstream/6056;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/189150, chr1-CpG: 150/Downstream/5167
Upstream sequence
AAGGTAAAAAAATTCACATAAAAATTATCTGGAATAAATTATTATCTATTTCTAATATCAAGCACTAATTGTAAACCATAGTAATTTAGGGTTTGGAAAC
Downstream sequence
AGACATTAAAACACTGTTCATATGCTTTCAAGGTTATCCATTTCTAAAGCTGAGTTATAAATGGTGTGCATGAAAAAAAACCCACAGTAATCTATTCATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate