VISDB Viral Integration Site DataBase

VIS ID

TVIS30001563

Fusion event

HIV-EFCAB14 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p33

Reference genome

Start

End

47173449/46707777 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-374b-5p ; hsa-mir-590-3p ; hsa-mir-130b-3p ; hsa-mir-106b-5p ; hsa-mir-9-5p ; hsa-mir-93-5p ; hsa-mir-615-3p ; hsa-mir-149-5p ; hsa-let-7b-5p ; hsa-mir-3163 ; hsa-mir-32-3p ; hsa-mir-6826-3p ; hsa-mir-7856-5p ; hsa-mir-20a-5p ; hsa-mir-4477b ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-340-5p ; hsa-mir-3944-5p ; hsa-mir-4660 ; hsa-mir-4735-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-506-3p ; hsa-mir-124-3p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-4446-5p ; hsa-mir-3674 ; hsa-mir-3679-3p ; hsa-mir-498 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-4703-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-5001-3p ; hsa-mir-4711-3p ; hsa-mir-6740-3p ; hsa-mir-4424 ; hsa-mir-676-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-4735-3p ; hsa-mir-4686 ; hsa-mir-18b-5p ; hsa-mir-6507-5p ; hsa-mir-18a-5p ; hsa-mir-548l ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-mir-12136/Upstream/2162225; hsa-mir-101-1/Downstream/4352060;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/39054, chr1-CpG: 64/Downstream/10953

Upstream sequence

TAGAATTATTTTCTTTTGCAGAAAGGATTAACATTTTAAATATCTGGTAAATGCATAACTATTTTACCTGACTTTAACATGCTGGGATTACAGTATGCAA

Downstream sequence

AACCCCATTTCAAAAAGTAAAACAAACTGAAATGAATTCCCTATACCTACAATTCTCTATATCCTATTCATACTAAACAACCAAACAAATATTCATAGCT