Basic Information
VIS ID
TVIS30001573
Fusion event
HIV-AK5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
77912227/77446542 (Hg38)
End
77912227/77446542 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1L
Target gene
AK5
Nearest miRNA
hsa-mir-101-1/Upstream/386340; hsa-mir-11399/Downstream/7687252;
Nearest TSS
ENST00000473358/Upstream/28849; ENST00000478255/Downstream/85565;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/164003, chr1-CpG: 94/Downstream/235990
Upstream sequence
gctttttctatttctgagaaaaatatctttgggatttttatagggattgtattgaatatatatattgctttaggttgtatggccattttcacaatattaa
Downstream sequence
ttactctgatccatgagcacttatttgtatccttttaatttccttcatcaatattttatagctttcagtatacaggtctttcacttccttcgttaaattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate