Basic Information
VIS ID
TVIS30001577
Fusion event
HIV-LOC100421401 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
89768015/89302332 (Hg38)
End
89768015/89302332 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1D
Target gene
LOC100421401
Nearest miRNA
hsa-mir-101-1/Upstream/2944645; hsa-mir-11399/Downstream/4544500;
Nearest TSS
ENST00000473358/Upstream/29528; ENST00000370456/Downstream/61726;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/309411, chr1-CpG: 114/Downstream/221919
Nearby gene
LOC729930(No orient, 11970)
Upstream sequence
cccttatctgaacccacccacatcttgctgattggtccattttgcagagagcagattggcccattttacagagagccaatgggcccattttacagagagc
Downstream sequence
tgattggtccgttttgatagggtgctgattggtgcatttacaaaccttgagctagacacagggtgctgattggtgcatttacaatcctttagctagacat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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