Basic Information
VIS ID
TVIS30001582
Fusion event
HIV-ZNF326 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
90471783/90006224 (Hg38)
End
90471783/90006224 (Hg38)
Orient
+
Location type
UTR3
Fragile sites / regions
FRA1D
Target gene
ZNF326
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-21-5p ; hsa-mir-3149 ; hsa-mir-628-5p ; hsa-mir-5701 ; hsa-mir-137 ; hsa-mir-4795-3p ; hsa-mir-496 ; hsa-mir-126-5p ; hsa-mir-501-5p ; hsa-mir-500b-5p ; hsa-mir-362-5p ; hsa-mir-335-3p ; hsa-mir-5706 ; hsa-mir-5096 ; hsa-mir-4782-5p ; hsa-mir-516b-5p ; hsa-mir-1299 ; hsa-mir-6754-3p ; hsa-mir-6837-3p ; hsa-mir-412-3p ; hsa-mir-3685 ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-4699-5p ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p
Nearest miRNA
hsa-mir-101-1/Upstream/3648537; hsa-mir-11399/Downstream/3840608;
Nearest TSS
ENST00000473358/Upstream/11087; ENST00000425185/Downstream/527248;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/10546, chr1-CpG: 67/Downstream/700321
Upstream sequence
CTGCTTCCAGTGTACCACTATGGTTTATAGTAAAGAAAAATTAAGAAAGTGAACAGTTGCAACTATTTTGCTTATGTGATAGATGTTTTGAAAAATGTAG
Downstream sequence
TTGGAAATAGGAATAATTTTTATATGGTTACTAGGATTCAGAAGTAAATCTATTTAGTGATCTGTAAATAATTGAAGTAATGTAACACTTAATGTTTTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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