Basic Information
VIS ID
TVIS30001584
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
95967330/95501774 (Hg38)
End
95967330/95501774 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1M
Nearest miRNA
hsa-mir-101-1/Upstream/957995; hsa-mir-11399/Downstream/2543468;
Nearest TSS
ENST00000473358/Upstream/27037; ENST00000440116/Downstream/8342;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/267188, chr1-CpG: 64/Downstream/1219772
Nearby gene
LINC02607(+8342) ;
Upstream sequence
gattgagtgcacggactctgaaaccaaactgcctggttttaaaaagcatttttactagccatgtgactctgagcaagtcacttaatctcttatgcctcag
Downstream sequence
tttcctaatctgttaaatgggaatgatgaagttgtcagtattacatgagtgaatacatatgaaatgtttagaagagtgcctggcacataTAGTACTATAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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