VISDB Viral Integration Site DataBase

VIS ID

TVIS30001587

Fusion event

HIV-chr1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p21.2

Reference genome

Start

End

101453896/100988340 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

DPH5 ; SLC30A7

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-193b-3p ; hsa-mir-155-5p ; hsa-mir-124-3p ; hsa-let-7b-5p ; hsa-mir-769-5p ; hsa-mir-221-3p ; hsa-let-7a-5p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-2113 ; hsa-mir-4729 ; hsa-mir-5680 ; hsa-mir-548aw ; hsa-mir-5696 ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-1321 ; hsa-mir-4270 ; hsa-mir-4441 ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-6754-5p ; hsa-mir-6799-5p ; hsa-mir-4728-3p ; hsa-mir-3714 ; hsa-mir-548an ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-340-5p ; hsa-mir-1827 ; hsa-mir-4720-3p ; hsa-mir-185-5p ; hsa-mir-4306 ; hsa-mir-4644 ; hsa-mir-5192 ; hsa-mir-2681-5p ; hsa-mir-148a-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-4804-3p ; hsa-mir-4484 ; hsa-mir-6768-3p ; hsa-mir-8077 ; hsa-mir-7160-5p ; hsa-mir-4663 ; hsa-mir-4680-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-6757-3p ; hsa-mir-4511 ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-1247-3p ; hsa-mir-2467-3p ; hsa-mir-3160-3p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-5186 ; hsa-mir-558 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6828-5p

Nearest miRNA

hsa-mir-101-1/Upstream/707032; hsa-mir-11399/Downstream/6908883;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/92088, chr1-CpG: 31/Downstream/37421

Nearby gene

DPH5(No orient, 1284)

Upstream sequence

gtaagattgcaactttctcttgagttctagccaCGCCTTACCACACAGTCTGGGAAAGACCGAAGGGGAAAAACCATATATAGTTCACAGctggtttcag

Downstream sequence

tgactccctagagtttttagaccattgtttattatattttgtccacagtttataattgggagggtttgtacattacaagctattacaccattaccaaaac