Basic Information
VIS ID
TVIS30001588
Fusion event
HIV-LOC102606465 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
101528215/101062659 (Hg38)
End
101528215/101062659 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA1E
Target gene
LOC102606465
Nearest miRNA
hsa-mir-101-1/Upstream/781351; hsa-mir-11399/Downstream/6834564;
Nearest TSS
ENST00000473358/Upstream/36571; ENST00000416329/Downstream/952;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/36535, chr1-CpG: 26/Downstream/173570
Upstream sequence
AGTGTATATTTCATTTCACTTTTGTACTTAATAAGTGGTATAGTTCTCACTTGTTTGTTGTTTCATTTGTTCCCTCAGTCTGTCACTTATAAATAATGAA
Downstream sequence
TATGTAAACTTGATTTTCACAACTTGGTTTGCTGCAATATAGCCCCCCAAAGTAACTGGGCTTTTATTAGTTTTTATTGCAAGTATTCCAGTTTTAACAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate