VISDB Viral Integration Site DataBase

VIS ID

TVIS30001590

Fusion event

HIV-GNAI3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p13.3

Reference genome

Start

End

110097540/109554918 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-181a-5p ; hsa-mir-431-5p ; hsa-mir-219b-5p ; hsa-mir-3691-3p ; hsa-mir-222-3p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-130a-5p ; hsa-mir-141-5p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-23c ; hsa-mir-3065-3p ; hsa-mir-1273h-5p ; hsa-mir-1288-5p ; hsa-mir-149-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3913-5p ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-450a-1-3p ; hsa-mir-4514 ; hsa-mir-4649-3p ; hsa-mir-4692 ; hsa-mir-4728-5p ; hsa-mir-485-5p ; hsa-mir-6511a-5p ; hsa-mir-6513-5p ; hsa-mir-665 ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6798-5p ; hsa-mir-6799-5p ; hsa-mir-6808-5p ; hsa-mir-6883-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-887-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-101-1/Upstream/1657614; hsa-mir-11399/Downstream/43975;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/5950, chr1-CpG: 23/Downstream/64924

Upstream sequence

tctagaatttttatggttttgggtcttagatttaagtcagtagccctatacaccaacagcaaccaagctgagaatcaaatcaagaactcaaccttttaca

Downstream sequence

gtagctgcaaacaaaaaacaaacaaacaaacaatacttaggaatatacttgaccaagaaggtgaaacacctctacaaggaaaactacaaaacacggctga