VISDB Viral Integration Site DataBase

VIS ID

TVIS30001600

Fusion event

HIV-RAP1A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p13.2

Reference genome

Start

End

112172895/111630273 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-337-3p ; hsa-let-7e-5p ; hsa-mir-3591-5p ; hsa-mir-1273e ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-636 ; hsa-mir-135a-3p ; hsa-mir-302c-3p ; hsa-mir-512-3p ; hsa-mir-520f-3p ; hsa-mir-4470 ; hsa-mir-759 ; hsa-mir-4761-5p ; hsa-mir-5000-5p ; hsa-mir-4735-3p ; hsa-mir-18b-5p ; hsa-mir-18a-5p ; hsa-mir-551b-5p ; hsa-mir-4799-5p ; hsa-mir-8059 ; hsa-mir-4471 ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-6715a-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-6822-5p ; hsa-mir-6750-5p ; hsa-mir-1277-5p ; hsa-mir-10a-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-203a-3p ; hsa-mir-203a-5p ; hsa-mir-1268a ; hsa-mir-1268b ; hsa-mir-1272 ; hsa-mir-340-3p ; hsa-mir-4486 ; hsa-mir-4684-5p ; hsa-mir-548c-3p ; hsa-mir-585-3p ; hsa-mir-6771-3p ; hsa-mir-6827-3p

Nearest miRNA

hsa-mir-101-1/Upstream/2031306; hsa-mir-11399/Downstream/831497;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/10058, chr1-CpG: 163/Downstream/108157

Nearest cancer related gene

RAP1A(TSG, No orient, 0)

Upstream sequence

ACTTTTATATGCTTCTATCCCAAAGGATTAAAATAAAACAAAATGAAGTGTACTGGTTGAATAGAATATTATGTACATTTTTCTTTATCAGAAGATTTTT

Downstream sequence

TCATACTCCTTTTGAATCAGCAATTTTGAATGCTAAATATAAATTCTTGACTAAGAAATCATTCCCTACAGTAATAATAAACAGTTTGGttagtcgtcca