VISDB Viral Integration Site DataBase

VIS ID

TVIS30001604

Fusion event

HIV-CAPZA1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p13.2

Reference genome

Start

End

113189274/112646652 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-9-5p ; hsa-mir-140-3p ; hsa-mir-30c-5p ; hsa-mir-194-5p ; hsa-mir-802 ; hsa-mir-3935 ; hsa-mir-3646 ; hsa-mir-4274 ; hsa-mir-4419a ; hsa-mir-4434 ; hsa-mir-4510 ; hsa-mir-4516 ; hsa-mir-5703 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6760-5p ; hsa-mir-6770-5p ; hsa-mir-6873-5p ; hsa-mir-6878-5p ; hsa-mir-142-5p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548k ; hsa-mir-548l ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-4722-3p ; hsa-mir-4769-3p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-5590-5p ; hsa-mir-5590-3p ; hsa-mir-548av-5p ; hsa-mir-548ay-5p ; hsa-mir-6727-3p ; hsa-mir-6817-5p ; hsa-mir-8054 ; hsa-mir-548bb-5p ; hsa-mir-432-3p ; hsa-mir-4534 ; hsa-mir-8082 ; hsa-mir-330-3p ; hsa-mir-4635 ; hsa-mir-7843-3p ; hsa-mir-127-5p ; hsa-mir-1193 ; hsa-mir-6514-5p ; hsa-mir-9-3p ; hsa-mir-6747-3p ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-6885-3p ; hsa-mir-4519 ; hsa-mir-1277-3p ; hsa-mir-624-3p ; hsa-mir-3682-3p ; hsa-mir-4257 ; hsa-mir-6847-5p ; hsa-mir-1272 ; hsa-mir-1252-3p ; hsa-mir-1206 ; hsa-mir-1264 ; hsa-mir-1273g-5p ; hsa-mir-1290 ; hsa-mir-1297 ; hsa-mir-1-3p ; hsa-mir-143-5p ; hsa-mir-183-5p ; hsa-mir-1909-3p ; hsa-mir-203a-5p ; hsa-mir-206 ; hsa-mir-2355-5p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-3167 ; hsa-mir-320e ; hsa-mir-3607-5p ; hsa-mir-3613-3p ; hsa-mir-3688-5p ; hsa-mir-3919 ; hsa-mir-3944-5p ; hsa-mir-4465 ; hsa-mir-5004-3p ; hsa-mir-548ac ; hsa-mir-548ae-3p ; hsa-mir-548ah-3p ; hsa-mir-548aj-3p ; hsa-mir-548am-3p ; hsa-mir-548aq-3p ; hsa-mir-548bb-3p ; hsa-mir-548d-3p ; hsa-mir-548h-3p ; hsa-mir-548j-3p ; hsa-mir-548x-3p ; hsa-mir-548z ; hsa-mir-6132 ; hsa-mir-613 ; hsa-mir-6516-3p ; hsa-mir-6716-5p ; hsa-mir-6722-3p ; hsa-mir-6836-5p ; hsa-mir-6853-3p ; hsa-mir-876-5p ; hsa-mir-891a-3p

Nearest miRNA

hsa-mir-101-1/Upstream/184819; hsa-mir-11399/Downstream/235398;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/26703, chr1-CpG: 69/Downstream/28201

Upstream sequence

gacaacagccaagaccctatctcaaaataaataaattaataaagttagtgacattgcttatgtttcattattaaggttgttgtagaattttggtaggtag

Downstream sequence

tcctttattaaattaaaggtgtttattttatatctaccaaaaattaatagttttggttttttatgatattggagtaggtgttaatttttttttttttttc