Basic Information
VIS ID
TVIS30001605
Fusion event
HIV-MOV10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
113222226/112679604 (Hg38)
End
113222226/112679604 (Hg38)
Orient
+
Location type
Intronic
Target gene
MOV10
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-155-5p ; hsa-mir-124-3p ; hsa-mir-34a-5p ; hsa-mir-16-5p ; hsa-mir-615-3p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/217771; hsa-mir-11399/Downstream/202446;
Nearest TSS
ENST00000473358/Upstream/4859; ENST00000479858/Downstream/14301;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/4129, chr1-CpG: 86/Downstream/27116
Upstream sequence
GACTTAATTTTGTGGACTATGGAGTTGTAAATTGAGGGAACAAGATCAGATTTGTGTTTGATGACAATTCTGCAGATATAGGGGGTGGCCTAGTGTAGGG
Downstream sequence
GTATGAAGCCAGAGGTAGGGAGAACAGTTAACTGGAACCtagaaaattgagcaaggggtatgatcaggcagctcacagaagaaatataaatgactaataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate