Basic Information
VIS ID
TVIS30001608
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
117340963/116798341 (Hg38)
End
117340963/116798341 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/126524; hsa-mir-1182/Downstream/296302;
Nearest TSS
ENST00000473358/Upstream/43874; ENST00000496699/Downstream/111190;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/130342, chr1-CpG: 126/Downstream/111240
Nearby gene
CD2(No orient, 29112)
Upstream sequence
TTGCCTCCTTCCCCCTCAACTTTATTTTTTGTTTGTTTACTTCTTCTTTCAGGGGACCAGAAAAATCTAAGATGTGCTATTTATTTACTCATTCATTCAT
Downstream sequence
CCatacattccttcagtcattttttactgcaaatatctatggtgccaggcactgtgttaggcactggCTTTAGAAGGGTGAAAATTATGAggctgggcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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