Basic Information
VIS ID
TVIS30001610
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p12
Reference genome
GRCh37/hg19
Start
118077649/117535027 (Hg38)
End
118077649/117535027 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/440299; hsa-mir-1182/Downstream/28315560;
Nearest TSS
ENST00000473358/Upstream/32166; ENST00000369448/Downstream/70658;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/167204, chr1-CpG: 135/Downstream/70309
Nearby gene
MAN1A2(No orient, 9329)
Upstream sequence
CAGGGGCACCTACCAAGATCCCCAAGAGTGATTCTCCCTTTTAAATTCAGCGTTCAGTCCTCCCCCAGTACCAAAGAGCCCATAAGATGCAAAAGTGAAT
Downstream sequence
GTTACTTAAAAAGAGGTTAAGGGACTCCCCTGGGAATAGCTTTCAAAAATACTTATCACTCATCAAAACTTCGAATGACTCAAAATGAATTTGGTGTGGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate