Basic Information
VIS ID
TVIS30001622
Fusion event
HIV-LOC105371231 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
146544436/147072888 (Hg38)
End
146544436/147072888 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
LOC105371231
Nearest miRNA
hsa-mir-101-1/Upstream/1222243; hsa-mir-1182/Downstream/1261591;
Nearest TSS
ENST00000473358/Upstream/69270; ENST00000440377/Downstream/89622;
Nearest CpG islands
chr1-CpG: 37/Target, None/Upstream, None/Downstream
Nearby gene
RNVU1-8(No orient, 11727)
Upstream sequence
GTGGACTCTAGTGATGGCTCTTTCCGTTCTTGGCTCCGCCTTCACCCGACTTTCTACGCCGCTTGGGCTCCCCTAGCTCAACTCGGCTTCGGTCGGTGCG
Downstream sequence
GCGGGAGAGAGAAAGGGTGAAAAGCAGAAATACAGAGAGGCGGGAGAGAAGCAGAGGAGGTGCGGACCAGGACAGAGAGACCTCCTGAGAAAGGCTGGTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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