Basic Information
VIS ID
TVIS30001654
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
157756738/157786948 (Hg38)
End
157756738/157786948 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/850704; hsa-mir-1182/Downstream/2113031;
Nearest TSS
ENST00000473358/Upstream/9816; ENST00000359209/Downstream/10872;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/591603, chr1-CpG: 28/Downstream/191982
Nearby gene
FCRL1(No orient, 7456)
Upstream sequence
caagaacaaaactccaactcaaaaaaaaaaaaaaaagaaaaaagaaaatttcaactaaaaatacttcatagagcaaagctgtccatcagaaatgaaagaa
Downstream sequence
atactttcccagatgtgcaaaagctgagagagtttatcatcactacatctaccttataaaaaatgctcagtggagttcttcaacctgaaagaagggacac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate