Basic Information
VIS ID
TVIS30001662
Fusion event
HIV-SDHC integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
161334379/161364589 (Hg38)
End
161334379/161364589 (Hg38)
Orient
+
Location type
UTR3
Target gene
SDHC
miRNAs that regulate target gene
hsa-mir-7-5p ; hsa-mir-877-3p ; hsa-mir-615-3p ; hsa-mir-320a ; hsa-mir-9-3p ; hsa-mir-8084
Nearest miRNA
hsa-mir-101-1/Upstream/137328; hsa-mir-1182/Downstream/792518;
Nearest TSS
ENST00000473358/Upstream/40975; ENST00000437833/Downstream/3285;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/49928, chr1-CpG: 77/Downstream/25120
Upstream sequence
CTCAGGATAAAAAATGAGTGGGTAGGGTTGAGGGACTGGTTCTTTGAGGTTCTGCCCTTTTTCCATGATTCAGACCAACTTTCTCTTGGTCATTTCTGGA
Downstream sequence
GTATAACTGACTCAATTCTTGTAAAAATGTGTTCCACCCAAACCACTGTATGTTCTTTTCCCTACTTTATTTTCTCCTACCTTCCTTCTCCTAATTGTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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