Basic Information
VIS ID
TVIS30001671
Fusion event
HIV-SELL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
169672733/169703592 (Hg38)
End
169672733/169703592 (Hg38)
Orient
+
Location type
Intronic
Target gene
SELL
Nearest miRNA
hsa-mir-101-1/Upstream/1327971; hsa-mir-1182/Downstream/447786;
Nearest TSS
ENST00000473358/Upstream/263; ENST00000496973/Downstream/1161;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/217253, chr1-CpG: 30/Downstream/91240
Upstream sequence
GACCCTCCCTTGAGCAAAGGATTTTTAGCCAAAGCTGCCTGACTACATTACTTGTGATATTGCTTCCAGGCTTTATTTTCTTGAGAATGATGGTGGGTGG
Downstream sequence
TGAATGAGAGATGAAGGCAAGGAAGCATTGAAAGCTGTGGGGAGAGGAGTAGCTACTCCAGGCTGCTGCCCTAGCTAAGGTGACCCTCCCCTTCTGCTGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate