Basic Information
VIS ID
TVIS30001672
Fusion event
HIV-KIFAP3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
169984450/170015309 (Hg38)
End
169984450/170015309 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIFAP3
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-671-3p ; hsa-mir-425-5p
Nearest miRNA
hsa-mir-101-1/Upstream/1639688; hsa-mir-1182/Downstream/136069;
Nearest TSS
ENST00000473358/Upstream/121042; ENST00000440321/Downstream/8768;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/121493, chr1-CpG: 30/Downstream/59160
Upstream sequence
CATGACTAGAAACTGAACAAACCAAAtagactatgaattccttcaggccaatggctgtaaattgtttatcttcatacattgagaagctgacctaataggt
Downstream sequence
gACACATAATTATGTCAGATTTATAATAAGTGAAAGGTCACATGATTTAAATTCAAGACCAATCAACTTTACTCTTAAAGTTTTCCTTATTCCTCCTCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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