Basic Information
VIS ID
TVIS30001675
Fusion event
HIV-LOC100506023 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
173241429/173272290 (Hg38)
End
173241429/173272290 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA1G
Target gene
LOC100506023
Nearest miRNA
hsa-mir-101-1/Upstream/1127646; hsa-mir-1182/Downstream/2696080;
Nearest TSS
ENST00000473358/Upstream/64977; ENST00000460950/Downstream/169807;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/738885, chr1-CpG: 100/Downstream/204549
Upstream sequence
ctgtcgtggggtggtggggggtgcagagagcattaggagaaatacctaatgtaaatgacaagttaatgggtgcagcacaccaacatggcacatgtatatg
Downstream sequence
tatgtaacaaatctgcatgctgtgcacatgtaccctagaacttaaagtataataaTAAaaaaaacagattctgagaatttaaccatgtcaatgtagtctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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