Basic Information
VIS ID
TVIS30001680
Fusion event
HIV-CEP350 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
179939377/179970242 (Hg38)
End
179939377/179970242 (Hg38)
Orient
-
Location type
Intronic
Target gene
CEP350
miRNAs that regulate target gene
hsa-mir-19b-3p ; hsa-mir-1229-3p ; hsa-mir-19a-3p ; hsa-mir-518a-5p ; hsa-mir-527 ; hsa-mir-616-3p ; hsa-mir-1468-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-4289 ; hsa-mir-548aj-5p ; hsa-mir-4698 ; hsa-mir-548aw ; hsa-mir-4426 ; hsa-mir-4647 ; hsa-mir-4662b ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-153-3p ; hsa-mir-648 ; hsa-mir-3606-5p ; hsa-mir-3658
Nearest miRNA
hsa-mir-101-1/Upstream/166217; hsa-mir-1182/Downstream/468072;
Nearest TSS
ENST00000473358/Upstream/15469; ENST00000357434/Downstream/15940;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/14958, chr1-CpG: 105/Downstream/184178
Upstream sequence
AGCTCTTTATTTCATCAGTGTGGGACATTGTGTTCTCTTTTATCCTTACTCTACTTCCTATGCTGCAAAGGCCAAAATAGTACTAATGTTACATAGTATC
Downstream sequence
TTCTGGATTTCCTGGATTACAGTAAGTCACTCAGTTTTTGTAAAAGTAGTTTTTGAGGTTTATATTTTATAAGTAGAAACAGGTGAGACTAAATTCTCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate