Basic Information
VIS ID
TVIS30001682
Fusion event
HIV-RGS8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
182713152/182744017 (Hg38)
End
182713152/182744017 (Hg38)
Orient
+
Location type
Intronic
Target gene
RGS8
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-101-1/Upstream/2305627; hsa-mir-1182/Downstream/9972311;
Nearest TSS
ENST00000473358/Upstream/31155; ENST00000471010/Downstream/45276;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/128607, chr1-CpG: 86/Downstream/45243
Nearby gene
NPL(No orient, 45432)
Upstream sequence
ttatcctgctttatttttcttcagagtactacctcttcctgaaactatgtttttatatgcttgttcacatgtttgttatctgactctccactgtaagttc
Downstream sequence
tgtgagggcagagactttggcttgttcaacatcgtatttccagtcccagaacaactcctgactcataatgtacactcaataattattgaaatataattca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate