VISDB Viral Integration Site DataBase

VIS ID

TVIS30001683

Fusion event

HIV-EDEM3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q25.3

Reference genome

Start

End

184713865/184744731 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-155-5p ; hsa-mir-335-5p ; hsa-mir-142-3p ; hsa-mir-4699-3p ; hsa-mir-412-3p ; hsa-mir-2054 ; hsa-mir-6754-3p ; hsa-mir-218-5p ; hsa-mir-4474-3p ; hsa-mir-7108-5p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-891a-3p ; hsa-mir-3688-5p ; hsa-mir-4732-5p ; hsa-mir-6832-5p ; hsa-mir-548au-3p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-3668 ; hsa-mir-5697 ; hsa-mir-3646 ; hsa-mir-1252-3p ; hsa-mir-6798-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-520f-5p ; hsa-mir-4640-3p ; hsa-mir-1307-5p ; hsa-mir-10a-3p ; hsa-mir-4282 ; hsa-mir-424-3p ; hsa-mir-548ad-3p ; hsa-mir-4799-5p ; hsa-mir-6727-5p ; hsa-mir-6792-5p ; hsa-mir-505-3p ; hsa-mir-202-3p ; hsa-mir-7162-3p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-4274 ; hsa-mir-6502-3p ; hsa-let-7e-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7a-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-98-5p ; hsa-mir-3529-5p ; hsa-mir-379-5p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-299-5p ; hsa-mir-6815-3p ; hsa-mir-7153-5p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-539-5p ; hsa-mir-4251 ; hsa-mir-1304-3p ; hsa-mir-892b ; hsa-mir-6782-3p ; hsa-mir-6757-3p ; hsa-mir-5692a ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-9-5p

Nearest miRNA

hsa-mir-101-1/Upstream/4306341; hsa-mir-1182/Downstream/7971597;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/80202, chr1-CpG: 116/Downstream/9387

Upstream sequence

acaataatagccaaagaccaaaaataagtcaaatactcattaaatggtgaatggacaaagaaattatgttcaatcaaatcaactaatactactgagtaat

Downstream sequence

aaataagaattacaatatatctccaatattgtgttctagcaaatcaactaacactactgagcaataaataggaattacaatatatctccaacaacatgga