VISDB Viral Integration Site DataBase

VIS ID

TVIS30001684

Fusion event

HIV-NIBAN1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q25.3

Reference genome

Start

End

184913117/184943985 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-124-3p ; hsa-mir-93-5p ; hsa-mir-484 ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-3678-3p ; hsa-mir-2467-3p ; hsa-mir-4699-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-888-5p ; hsa-mir-7849-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-526b-3p ; hsa-mir-106a-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-4474-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-8063 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-1273a ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-212-5p ; hsa-mir-6849-3p ; hsa-mir-1228-3p ; hsa-mir-508-5p

Nearest miRNA

hsa-mir-101-1/Upstream/4505595; hsa-mir-1182/Downstream/7772343;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/188681, chr1-CpG: 95/Downstream/29745

Upstream sequence

GTACAACCGAAAGGGAAAAAATAAAGCTCAGGATTTTAAGCTTATCACAAAAACAGGGTAAGATGGATAGGATGATCTTGCAAAAAGACATATGGAAAAA

Downstream sequence

TCATACACTACATTTGTCCCTGACACATTGTACAGCAACAGCTATACAATTACCTCTACGGACGTTGCTGATTGCTGTCTTTGTGTACATGGAGCATCAA