Basic Information
VIS ID
TVIS30001689
Fusion event
HIV-ASPM integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
197088791/197119661 (Hg38)
End
197088791/197119661 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1K
Target gene
ASPM
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-let-7a-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-101-1/Upstream/537180; hsa-mir-1182/Downstream/1739212;
Nearest TSS
ENST00000473358/Upstream/52394; ENST00000475659/Downstream/15483;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/241373, chr1-CpG: 59/Downstream/26487
Upstream sequence
ATTACCAAATTTAGCAAGTATTTGAAAATTACATATACTGATGATAAAAGTTTCCATGTATGGTCATTGACCCTTTTTAATCAGACTGTTGTTGAGTCAG
Downstream sequence
CCAGGTACCAGCTTATTTCTTTTATCTTGCCTCATATATATAGGGCCAAATTCTAGGACTTCTTTTGCTTTGGAGTTTATGGCTATTTGTTGACAGGAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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