Basic Information
VIS ID
TVIS30001693
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
198589609/198620479 (Hg38)
End
198589609/198620479 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/2037998; hsa-mir-1182/Downstream/238394;
Nearest TSS
ENST00000473358/Upstream/21611; ENST00000367364/Downstream/17978;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/461245, chr1-CpG: 36/Downstream/1414867
Nearby gene
PTPRC(No orient, 18489)
Nearest cancer related gene
PTPRC(TSG, No orient, 18489)
Upstream sequence
AACAATTGTAAACTTGCAGCTAAAATAGCTGATCATATCCGTCTACAGGGAGGCACTACACATTTGCGTGAATACTTCCTCTTCTATTTGAAAAGTGTAG
Downstream sequence
ATTTACTTACATTCTTTTAAATATATCAGCACAGACTATCAGGCCGAGGATCACTGTCTTCCAACACAGTAAACATGGACCTGGTTCTTGTGCTCCAGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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