Basic Information
VIS ID
TVIS30001695
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
203263444/203294316 (Hg38)
End
203263444/203294316 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/1291080; hsa-mir-1182/Downstream/2153986;
Nearest TSS
ENST00000473358/Upstream/6546; ENST00000475157/Downstream/10232;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/20626, chr1-CpG: 94/Downstream/10853
Nearby gene
LINC01136(No orient, 4442)
Upstream sequence
ggtagcacagctaggatttgaacctaagcagtgtggctttaagggatgtgctctGCCCATCGCACTAGAACAAATCCGTCAGTTCAAAAACTTAATTAGC
Downstream sequence
CCATCCAGGGACACCAATGTAAAAAAGCATAATTATATGCCATCGGAGCCAGTCATCATCAAAACAAGACTGATATAAGGCCAGGTgcctataatcccaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate