Basic Information
VIS ID
TVIS30001700
Fusion event
HIV-ELK4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
End
205580436/205611308 (Hg38)
Orient
-
Location type
UTR3
Target gene
miRNAs that regulate target gene
hsa-mir-484 ; hsa-let-7b-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-4262 ; hsa-mir-5011-5p ; hsa-mir-5582-3p ; hsa-mir-6715a-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-16-1-3p ; hsa-mir-1305 ; hsa-mir-155-5p ; hsa-mir-126-5p ; hsa-mir-498 ; hsa-mir-335-3p ; hsa-mir-4795-3p ; hsa-mir-3140-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-656-3p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-4687-5p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-5089-3p ; hsa-mir-302a-5p ; hsa-mir-5684 ; hsa-mir-1255b-2-3p ; hsa-mir-4477a ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-451b ; hsa-mir-5700 ; hsa-mir-3939 ; hsa-mir-4704-3p ; hsa-mir-190a-3p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-8485 ; hsa-mir-6715b-3p ; hsa-mir-1248 ; hsa-mir-3163 ; hsa-mir-6776-3p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-521 ; hsa-mir-603 ; hsa-mir-1238-5p ; hsa-mir-1252-5p ; hsa-mir-2278 ; hsa-mir-298 ; hsa-mir-3681-5p ; hsa-mir-376b-5p ; hsa-mir-376c-5p ; hsa-mir-4468 ; hsa-mir-4481 ; hsa-mir-4670-5p ; hsa-mir-4745-5p ; hsa-mir-4758-5p ; hsa-mir-5191 ; hsa-mir-548c-3p ; hsa-mir-6501-3p ; hsa-mir-651-3p ; hsa-mir-6849-5p ; hsa-mir-1231 ; hsa-mir-1270 ; hsa-mir-4683 ; hsa-mir-4708-5p ; hsa-mir-516b-5p ; hsa-mir-620 ; hsa-mir-654-3p
Nearest miRNA
hsa-mir-101-1/Upstream/162910; hsa-mir-1182/Downstream/863495;
Upstream sequence
cttgaagaaactgacagtttcaaatgaaacaattatactaccattaacgattcacctttcagatttgctcggcttacaggtcaaaacatgacttgtaTAG
Downstream sequence
TAACAGGTTCCACCAAGTACAAGAAATAAAATCAAACCACCTTCTTTTCTTAATACACGACCAACCACAAGAATTCTAGATCCTAAGATTAAACTTCAAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate