Basic Information
VIS ID
TVIS30001701
Fusion event
HIV-RASSF5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
206745136/206571808 (Hg38)
End
206745136/206571808 (Hg38)
Orient
+
Location type
Intronic
Target gene
RASSF5
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-335-5p ; hsa-mir-1-3p ; hsa-mir-374b-5p ; hsa-mir-193b-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-214-5p
Nearest miRNA
hsa-mir-101-1/Upstream/96944; hsa-mir-1182/Downstream/1230044;
Nearest TSS
ENST00000473358/Upstream/14247; ENST00000605653/Downstream/11312;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/14228, chr1-CpG: 26/Downstream/40643
Nearest cancer related gene
RASSF5(TSG, No orient, 0)
Upstream sequence
ttctgtcagatgtagagaagggaggacttttcaggcagaatggtcagatgaagggctcagggagactgaaaggaCGCTGACCTAGGTGAGGCTGGGTGAG
Downstream sequence
GGGACAGGGACCTAGCTGGAAATCCAAGGAGGAAAACACCCAAAGGAAGACCTTCTAGAAACTCCTGAGGGCATAAGATGTCCCAAGGGAAAATTCCTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate