VISDB Viral Integration Site DataBase

VIS ID

TVIS30001702

Fusion event

HIV-DYRK3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

206821346/206648001 (Hg38)

Orient

+

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-203a-3p ; hsa-mir-513a-5p ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-936 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-5680 ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-3591-5p ; hsa-mir-489-3p ; hsa-mir-4709-3p ; hsa-mir-623 ; hsa-mir-142-3p ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-6894-5p ; hsa-mir-3605-5p ; hsa-mir-4468 ; hsa-mir-605-3p ; hsa-mir-3185 ; hsa-mir-4635 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-556-5p ; hsa-mir-648 ; hsa-mir-2392 ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-5197-3p ; hsa-mir-3714 ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-4800-5p ; hsa-mir-3138 ; hsa-mir-4252 ; hsa-mir-7114-5p ; hsa-mir-4318 ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-1288-5p ; hsa-mir-1827 ; hsa-mir-202-3p ; hsa-mir-2682-5p ; hsa-mir-34b-5p ; hsa-mir-3927-3p ; hsa-mir-4458 ; hsa-mir-449c-5p ; hsa-mir-4500 ; hsa-mir-548au-3p ; hsa-mir-5694 ; hsa-mir-6831-5p ; hsa-mir-98-5p

Nearest miRNA

hsa-mir-101-1/Upstream/173137; hsa-mir-1182/Downstream/1153851;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/12159, chr1-CpG: 135/Downstream/36880

Upstream sequence

TGGCCCTAAAAATGGTGCGCAATGAGAAGCGCTTTCATCGTCAAGCAGCTGAGGAGATCCGGATTTTGGAGCATCTTAAGAAACAGGATAAAACTGGTAG

Downstream sequence

TATGAACGTTATCCACATGCTGGAAAGTTTCACATTCCGGAACCATGTTTGCATGGCCTTTGAATTGCTGAGCATAGACCTTTATGAGCTGATTAAAAAA