Basic Information
VIS ID
TVIS30001703
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
207048275/206874930 (Hg38)
End
207048275/206874930 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/400066; hsa-mir-1182/Downstream/926922;
Nearest TSS
ENST00000473358/Upstream/9121; ENST00000480741/Downstream/22513;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/188624, chr1-CpG: 63/Downstream/34418
Nearby gene
IL20(No orient, 5707)
Upstream sequence
ggacagaagatttaaaagatctctactggaaactgcaaaccattgctggaagaaattaaagacgatctaaataataaatatataccatattcatgggtta
Downstream sequence
aaagattcaactttattaagattttctccccaacatgatctataaacttaaggcattcacaatcaaaattccagctgctttgttttaggtaaaatttata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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